For some reason which the game never explains why, SWAT members came in and shot everyone inside the church.
Aya had been on the verge of death after being shot countless times. Eve Brea had tried to "reach" Aya. This resulted in the birth of the "Overdive" ability. The current Aya is actually Eve in Aya's body. Eve, on the other hand, had accidentally shattered Aya's soul when she dived into Aya's body, resulting in the shards being scattered across time and space and giving birth to the Twisted. The High Ones, on the other hand, were formed from the de-souled body of Eve, thus transferring her memories and the Overdive ability to them.
What Kyle did during the few years after Time Zero is never explained. The datalogs only claim "There's no record of anyone by that name in any agency database", perhaps implying Kyle was erased from existence somehow, or perhaps transported to another universe. The same goes for Eve, implying both of them were erased from existence or from the regular space-time continuum.
The 3rd Birthday
Return to Time Zero
After defeating Hyde Bohr's High One form, Hyde will open a portal to Time Zero. The last cutscene will begin where Hyde orders Eve to dive back to her original body. Hyde begins to explain everything and he offers Eve to take him with her when her body was destroyed but, Eve refused. Hyde tries to take Eve into him but was shot by Aya whose soul was supposed to be destroyed.
Unfortunately, the events cannot be prevented if the sources are not removed. Aya then states her regrets about not being able to exchange vows with Kyle, then requests that Eve shoot her to prevent the Twisted. After an emotional moment, Eve Overdives into Aya's body while Aya Overdives into Eve's. The sisters then enjoy a last moment before Eve, the new Aya Brea (Eve) shoots Eve (Aya).
After hearing Kyle's disembodied voice, Eve finds him alive and well. Aya's voice then gives Eve some final words of encouragement accompanied with a light, before a new timeline is created. One in which Eve's physical form never existed nor Aya's soul.
The new time axis
The scene switches back to the wedding. As Kyle is about to marry Aya Brea who is now Eve, he chuckles and tells Eve to be strong and independent about her own life, and that he and Aya will watch over her. He then states that he is on a quest to find eternity (Aya), and wishes Eve a happy birthday before leaving the church.
|Aya Brea - Eve Brea - Kyle Madigan|
Hyde Bohr - Thelonious Cray - Hunter Owen - Blank - Gabrielle Monsigny - Kunihiko Maeda - Emily Jefferson - Ginger - Seamus Rose
Slacker - Wad - Stinker - Snatcher - Bean - Roller - Rover - Detector - Worm - Spitter - Mudflap - Reaper - Helix - Queen
|Babel - CTI Headquarters - Club Sacrifice - Maeda's House - North Shallows Tower - Rockefeller Center - Saint Thomas Church - Spanish Harlem|
|Cheat Codes - Feats - Outfits - Overdive - Over Energy - Soundtrack - Weapons|